Detailed information of SNP:



SNP ID: sf0103415327(Gbrowse)

Chromosome: chr01

Position: 3415327
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 85.89% 14.11%
All Indica799 98.12% 1.88%
All Japonica495 63.84% 36.16%
Aus67 97.01% 2.99%
Indica I375 98.13% 1.87%
Indica II213 96.24% 3.76%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica334 72.16% 27.84%
Tropical Japonica94 30.85% 69.15%
Japonica Intermediate67 68.66% 31.34%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0103415327 C->T INTERGENIC None