Detailed information of SNP:
|
SNP ID:
sf0103415441(Gbrowse)
Chromosome: chr01 Position: 3415441 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 86.59% | 13.41% |
| All Indica | 793 | 98.61% | 1.39% |
| All Japonica | 495 | 64.85% | 35.15% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 207 | 98.55% | 1.45% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 73.35% | 26.65% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103415441 | C->T | INTERGENIC | None |