Detailed information of SNP:
|
SNP ID:
sf0103415626(Gbrowse)
Chromosome: chr01 Position: 3415626 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 86.54% | 13.46% |
| All Indica | 795 | 98.74% | 1.26% |
| All Japonica | 496 | 64.52% | 35.48% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 209 | 99.04% | 0.96% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 72.54% | 27.46% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103415626 | C->T | INTERGENIC | None |