Detailed information of SNP:
|
SNP ID:
sf0103415985(Gbrowse)
Chromosome: chr01 Position: 3415985 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 54.87% | 45.13% |
| All Indica | 799 | 88.99% | 11.01% |
| All Japonica | 497 | 10.26% | 89.74% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 13.13% | 86.87% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 11 | 9.09% | 90.91% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103415985 | T->C | INTERGENIC | None |