Detailed information of SNP:
|
SNP ID:
sf0103416456(Gbrowse)
Chromosome: chr01 Position: 3416456 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.43% | 44.57% |
| All Indica | 799 | 89.24% | 10.76% |
| All Japonica | 497 | 10.66% | 89.34% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 13.43% | 86.57% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103416456 | G->A | INTERGENIC | None |