Detailed information of SNP:
|
SNP ID:
sf0103416535(Gbrowse)
Chromosome: chr01 Position: 3416535 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 86.06% | 13.94% |
| All Indica | 797 | 98.12% | 1.88% |
| All Japonica | 497 | 64.19% | 35.81% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 72.24% | 27.76% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103416535 | C->T | INTERGENIC | None |