Detailed information of SNP:
|
SNP ID:
sf0103425681(Gbrowse)
Chromosome: chr01 Position: 3425681 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 50.39% | 49.61% |
| All Indica | 789 | 83.14% | 16.86% |
| All Japonica | 497 | 8.25% | 91.75% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 372 | 86.83% | 13.17% |
| Indica II | 209 | 86.60% | 13.40% |
| Indica Intermediate | 208 | 73.08% | 26.92% |
| Temperate Japonica | 335 | 10.75% | 89.25% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103425681 | C->T | LOC_Os01g07260(LOC_Os01g07260.1) | Non-Synonymous SNP |