Detailed information of SNP:
|
SNP ID:
sf0103428839(Gbrowse)
Chromosome: chr01 Position: 3428839 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 69.26% | 30.74% |
| All Indica | 798 | 91.10% | 8.90% |
| All Japonica | 496 | 46.77% | 53.23% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 41.19% | 58.81% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 67 | 38.81% | 61.19% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103428839 | C->T | INTERGENIC | None |