Detailed information of SNP:
|
SNP ID:
sf0103441104(Gbrowse)
Chromosome: chr01 Position: 3441104 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 70.33% | 29.67% |
| All Indica | 799 | 63.33% | 36.67% |
| All Japonica | 497 | 77.67% | 22.33% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 81.87% | 18.13% |
| Indica II | 213 | 28.17% | 71.83% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 90.45% | 9.55% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103441104 | C->T | INTERGENIC | None |