Detailed information of SNP:
|
SNP ID:
sf0103471849(Gbrowse)
Chromosome: chr01 Position: 3471849 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 62.72% | 37.28% |
| All Indica | 799 | 41.18% | 58.82% |
| All Japonica | 497 | 90.34% | 9.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 20.00% | 80.00% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 43.13% | 56.87% |
| Temperate Japonica | 335 | 87.46% | 12.54% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103471849 | C->A | INTERGENIC | None |