Detailed information of SNP:
|
SNP ID:
sf0103478251(Gbrowse)
Chromosome: chr01 Position: 3478251 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1257 | 94.11% | 5.89% |
| All Indica | 732 | 92.90% | 7.10% |
| All Japonica | 406 | 96.80% | 3.20% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 360 | 93.33% | 6.67% |
| Indica II | 178 | 93.26% | 6.74% |
| Indica Intermediate | 194 | 91.75% | 8.25% |
| Temperate Japonica | 310 | 98.06% | 1.94% |
| Tropical Japonica | 46 | 89.13% | 10.87% |
| Japonica Intermediate | 50 | 96.00% | 4.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103478251 | A->C | INTERGENIC | None |