Detailed information of SNP:
|
SNP ID:
sf0103484561(Gbrowse)
Chromosome: chr01 Position: 3484561 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 72.13% | 27.87% |
| All Indica | 798 | 58.15% | 41.85% |
| All Japonica | 482 | 90.25% | 9.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 63.64% | 36.36% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 211 | 43.13% | 56.87% |
| Temperate Japonica | 334 | 87.72% | 12.28% |
| Tropical Japonica | 83 | 96.39% | 3.61% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103484561 | A->T | INTERGENIC | None |