Detailed information of SNP:
|
SNP ID:
sf0103494750(Gbrowse)
Chromosome: chr01 Position: 3494750 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 71.02% | 28.98% |
| All Indica | 798 | 57.14% | 42.86% |
| All Japonica | 497 | 90.54% | 9.46% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 64.44% | 35.56% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 211 | 41.23% | 58.77% |
| Temperate Japonica | 335 | 87.76% | 12.24% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103494750 | G->A | LOC_Os01g07382(LOC_Os01g07382.1) | INTRON |