Detailed information of SNP:
|
SNP ID:
sf0103510143(Gbrowse)
Chromosome: chr01 Position: 3510143 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 79.99% | 20.01% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 483 | 47.20% | 52.80% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 328 | 40.85% | 59.15% |
| Tropical Japonica | 92 | 73.91% | 26.09% |
| Japonica Intermediate | 63 | 41.27% | 58.73% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103510143 | C->T | INTERGENIC | None |