Detailed information of SNP:
|
SNP ID:
sf0103524065(Gbrowse)
Chromosome: chr01 Position: 3524065 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 51.13% | 48.87% |
| All Indica | 796 | 50.88% | 49.12% |
| All Japonica | 497 | 57.34% | 42.66% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 373 | 57.91% | 42.09% |
| Indica II | 212 | 52.36% | 47.64% |
| Indica Intermediate | 211 | 36.97% | 63.03% |
| Temperate Japonica | 335 | 63.88% | 36.12% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103524065 | A->G | INTERGENIC | None |