Detailed information of SNP:
|
SNP ID:
sf0103529099(Gbrowse)
Chromosome: chr01 Position: 3529099 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 86.63% | 13.37% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 478 | 63.60% | 36.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 322 | 52.17% | 47.83% |
| Tropical Japonica | 91 | 96.70% | 3.30% |
| Japonica Intermediate | 65 | 73.85% | 26.15% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103529099 | A->G | INTERGENIC | None |