Detailed information of SNP:
|
SNP ID:
sf0103540882(Gbrowse)
Chromosome: chr01 Position: 3540882 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 61.85% | 38.15% |
| All Indica | 798 | 37.22% | 62.78% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 57.33% | 42.67% |
| Indica II | 213 | 19.72% | 80.28% |
| Indica Intermediate | 210 | 19.05% | 80.95% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103540882 | A->T | INTERGENIC | None |