Detailed information of SNP:
|
SNP ID:
sf0103575159(Gbrowse)
Chromosome: chr01 Position: 3575159 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 74.98% | 25.02% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 496 | 34.27% | 65.73% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 29.85% | 70.15% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 67 | 20.90% | 79.10% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103575159 | G->A | INTERGENIC | None |