Detailed information of SNP:
|
SNP ID:
sf0103582289(Gbrowse)
Chromosome: chr01 Position: 3582289 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 88.20% | 11.80% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 486 | 68.31% | 31.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 329 | 57.14% | 42.86% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 80.30% | 19.70% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103582289 | A->G | INTERGENIC | None |