Detailed information of SNP:
|
SNP ID:
sf0103589789(Gbrowse)
Chromosome: chr01 Position: 3589789 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 60.04% | 39.96% |
| All Indica | 799 | 33.92% | 66.08% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 56.53% | 43.47% |
| Indica II | 213 | 8.45% | 91.55% |
| Indica Intermediate | 211 | 19.43% | 80.57% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103589789 | G->A | INTERGENIC | None |