Detailed information of SNP:
|
SNP ID:
sf0103603713(Gbrowse)
Chromosome: chr01 Position: 3603713 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 58.15% | 41.85% |
| All Indica | 798 | 39.35% | 60.65% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 60.53% | 39.47% |
| Indica II | 212 | 14.62% | 85.38% |
| Indica Intermediate | 211 | 26.54% | 73.46% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103603713 | C->T | INTERGENIC | None |