Detailed information of SNP:



SNP ID: sf0103603713(Gbrowse)

Chromosome: chr01

Position: 3603713
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 58.15% 41.85%
All Indica798 39.35% 60.65%
All Japonica497 95.17% 4.83%
Aus67 8.96% 91.04%
Indica I375 60.53% 39.47%
Indica II212 14.62% 85.38%
Indica Intermediate211 26.54% 73.46%
Temperate Japonica335 93.73% 6.27%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 41.46% 58.54%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0103603713 C->T INTERGENIC None