Detailed information of SNP:
|
SNP ID:
sf0103657465(Gbrowse)
Chromosome: chr01 Position: 3657465 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 58.47% | 41.53% |
| All Indica | 798 | 31.33% | 68.67% |
| All Japonica | 496 | 95.16% | 4.84% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 49.73% | 50.27% |
| Indica II | 213 | 8.45% | 91.55% |
| Indica Intermediate | 211 | 21.80% | 78.20% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103657465 | C->T | INTERGENIC | None |