Detailed information of SNP:
|
SNP ID:
sf0103793839(Gbrowse)
Chromosome: chr01 Position: 3793839 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 64.76% | 35.24% |
| All Indica | 798 | 97.24% | 2.76% |
| All Japonica | 496 | 9.48% | 90.52% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 93 | 35.48% | 64.52% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 11 | 0.00% | 100.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103793839 | G->A | INTERGENIC | None |