Detailed information of SNP:



SNP ID: sf0103823036(Gbrowse)

Chromosome: chr01

Position: 3823036
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 64.06% 35.94%
All Indica799 96.50% 3.50%
All Japonica497 10.06% 89.94%
Aus67 88.06% 11.94%
Indica I375 98.13% 1.87%
Indica II213 97.65% 2.35%
Indica Intermediate211 92.42% 7.58%
Temperate Japonica335 4.48% 95.52%
Tropical Japonica94 31.91% 68.09%
Japonica Intermediate68 7.35% 92.65%
Group VI/Aromatic14 28.57% 71.43%
Intermediate42 59.52% 40.48%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0103823036 T->C LOC_Os01g07910(LOC_Os01g07910.1) INTRON