Detailed information of SNP:
|
SNP ID:
sf0103823036(Gbrowse)
Chromosome: chr01 Position: 3823036 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 64.06% | 35.94% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 497 | 10.06% | 89.94% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103823036 | T->C | LOC_Os01g07910(LOC_Os01g07910.1) | INTRON |