Detailed information of SNP:
|
SNP ID:
sf0103823970(Gbrowse)
Chromosome: chr01 Position: 3823970 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 83.77% | 16.23% |
| All Indica | 797 | 72.65% | 27.35% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 56.68% | 43.32% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103823970 | A->G | INTERGENIC | None |