Detailed information of SNP:
|
SNP ID:
sf0103846902(Gbrowse)
Chromosome: chr01 Position: 3846902 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 78.97% | 21.03% |
| All Indica | 797 | 72.15% | 27.85% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 373 | 56.03% | 43.97% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103846902 | T->C | LOC_Os01g07960(LOC_Os01g07960.1) | INTRON |
| sf0103846902 | T->C | LOC_Os01g07960(LOC_Os01g07960.2) | INTRON |
| sf0103846902 | T->C | LOC_Os01g07960(LOC_Os01g07960.3) | INTRON |