Detailed information of SNP:
|
SNP ID:
sf0103857123(Gbrowse)
Chromosome: chr01 Position: 3857123 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 98.64% | 1.36% |
| All Indica | 779 | 97.56% | 2.44% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 98.64% | 1.36% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 201 | 97.51% | 2.49% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103857123 | A->G | INTERGENIC | None |