Detailed information of SNP:
|
SNP ID:
sf0103960186(Gbrowse)
Chromosome: chr01 Position: 3960186 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 60.75% | 39.25% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103960186 | G->T | LOC_Os01g08170(LOC_Os01g08170.1) | Synonymous |