Detailed information of SNP:
|
SNP ID:
sf0103976465(Gbrowse)
Chromosome: chr01 Position: 3976465 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 93.94% | 6.06% |
| All Indica | 799 | 93.49% | 6.51% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103976465 | C->T | LOC_Os01g08190(LOC_Os01g08190.5) | INTRON |
| sf0103976465 | C->T | LOC_Os01g08190(LOC_Os01g08190.2) | INTRON |
| sf0103976465 | C->T | LOC_Os01g08190(LOC_Os01g08190.1) | INTRON |
| sf0103976465 | C->T | LOC_Os01g08190(LOC_Os01g08190.3) | INTRON |