Detailed information of SNP:
|
SNP ID:
sf0103999380(Gbrowse)
Chromosome: chr01 Position: 3999380 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 56.63% | 43.37% |
| All Indica | 798 | 91.98% | 8.02% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 374 | 89.30% | 10.70% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0103999380 | A->G | INTERGENIC | None |