Detailed information of SNP:
|
SNP ID:
sf0104006398(Gbrowse)
Chromosome: chr01 Position: 4006398 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 55.33% | 44.67% |
| All Indica | 797 | 91.84% | 8.16% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 374 | 89.04% | 10.96% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104006398 | C->T | INTERGENIC | None |