Detailed information of SNP:
|
SNP ID:
sf0104007756(Gbrowse)
Chromosome: chr01 Position: 4007756 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 78.72% | 21.28% |
| All Indica | 799 | 92.37% | 7.63% |
| All Japonica | 497 | 66.00% | 34.00% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 92.24% | 7.76% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104007756 | A->G | INTERGENIC | None |