Detailed information of SNP:
|
SNP ID:
sf0104019130(Gbrowse)
Chromosome: chr01 Position: 4019130 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 50.32% | 49.68% |
| All Indica | 798 | 84.46% | 15.54% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 77.27% | 22.73% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104019130 | G->T | INTERGENIC | None |