Detailed information of SNP:
|
SNP ID:
sf0104076013(Gbrowse)
Chromosome: chr01 Position: 4076013 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 88.92% | 11.08% |
| All Indica | 797 | 88.96% | 11.04% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 374 | 80.75% | 19.25% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104076013 | G->A | INTERGENIC | None |