Detailed information of SNP:
|
SNP ID:
sf0104077758(Gbrowse)
Chromosome: chr01 Position: 4077758 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 59.94% | 40.06% |
| All Indica | 798 | 93.23% | 6.77% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 89.57% | 10.43% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104077758 | G->A | INTERGENIC | None |