Detailed information of SNP:
|
SNP ID:
sf0104080958(Gbrowse)
Chromosome: chr01 Position: 4080958 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 57.50% | 42.50% |
| All Indica | 794 | 27.83% | 72.17% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 33.33% | 66.67% |
| Indica II | 209 | 9.57% | 90.43% |
| Indica Intermediate | 210 | 36.19% | 63.81% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104080958 | G->A | LOC_Os01g08330(LOC_Os01g08330.1) | Non-Synonymous SNP |