Detailed information of SNP:
|
SNP ID:
sf0104201598(Gbrowse)
Chromosome: chr01 Position: 4201598 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 50.99% | 49.01% |
| All Indica | 799 | 22.15% | 77.85% |
| All Japonica | 496 | 90.12% | 9.88% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 31.47% | 68.53% |
| Indica II | 213 | 6.57% | 93.43% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104201598 | A->C | INTERGENIC | None |