Detailed information of SNP:
|
SNP ID:
sf0104260328(Gbrowse)
Chromosome: chr01 Position: 4260328 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 57.64% | 42.36% |
| All Indica | 795 | 30.69% | 69.31% |
| All Japonica | 496 | 92.94% | 7.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 39.08% | 60.92% |
| Indica II | 213 | 9.39% | 90.61% |
| Indica Intermediate | 211 | 37.44% | 62.56% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104260328 | T->A | INTERGENIC | None |