Detailed information of SNP:
|
SNP ID:
sf0104296093(Gbrowse)
Chromosome: chr01 Position: 4296093 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 57.13% | 42.87% |
| All Indica | 798 | 92.36% | 7.64% |
| All Japonica | 496 | 9.48% | 90.52% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104296093 | T->A | INTERGENIC | None |