Detailed information of SNP:
SNP ID:
sf0104310438(Gbrowse)
Chromosome: chr01 Position: 4310438 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1419 | 87.74% | 12.26% |
All Indica | 799 | 99.62% | 0.38% |
All Japonica | 497 | 66.80% | 33.20% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 335 | 92.54% | 7.46% |
Tropical Japonica | 94 | 5.32% | 94.68% |
Japonica Intermediate | 68 | 25.00% | 75.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0104310438 | C->A | INTERGENIC | None |