Detailed information of SNP:
|
SNP ID:
sf0104321740(Gbrowse)
Chromosome: chr01 Position: 4321740 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1310 | 87.94% | 12.06% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 389 | 63.50% | 36.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 231 | 41.56% | 58.44% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 89.23% | 10.77% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104321740 | T->A | LOC_Os01g08680(LOC_Os01g08680.1) | UTR_3_PRIME |
| sf0104321740 | T->A | LOC_Os01g08680(LOC_Os01g08680.2) | UTR_3_PRIME |