Detailed information of SNP:
|
SNP ID:
sf0104338492(Gbrowse)
Chromosome: chr01 Position: 4338492 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 75.61% | 24.39% |
| All Indica | 780 | 57.69% | 42.31% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 74.86% | 25.14% |
| Indica II | 211 | 20.85% | 79.15% |
| Indica Intermediate | 203 | 65.02% | 34.98% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104338492 | T->A | INTERGENIC | None |