Detailed information of SNP:
|
SNP ID:
sf0104341395(Gbrowse)
Chromosome: chr01 Position: 4341395 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 55.40% | 44.60% |
| All Indica | 798 | 93.36% | 6.64% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104341395 | C->T | LOC_Os01g08710(LOC_Os01g08710.1) | INTRON |