Detailed information of SNP:
|
SNP ID:
sf0104402637(Gbrowse)
Chromosome: chr01 Position: 4402637 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 74.13% | 25.87% |
| All Indica | 796 | 97.49% | 2.51% |
| All Japonica | 497 | 34.81% | 65.19% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 14.63% | 85.37% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104402637 | G->A | LOC_Os01g08780(LOC_Os01g08780.1) | INTRON |