Detailed information of SNP:
|
SNP ID:
sf0104410747(Gbrowse)
Chromosome: chr01 Position: 4410747 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 89.46% | 10.54% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 492 | 71.34% | 28.66% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 90 | 11.11% | 88.89% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104410747 | C->T | INTERGENIC | None |