Detailed information of SNP:
|
SNP ID:
sf0104428723(Gbrowse)
Chromosome: chr01 Position: 4428723 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 86.19% | 13.81% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 491 | 71.69% | 28.31% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 91.64% | 8.36% |
| Tropical Japonica | 88 | 11.36% | 88.64% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104428723 | G->A | INTERGENIC | None |