Detailed information of SNP:
|
SNP ID:
sf0104442530(Gbrowse)
Chromosome: chr01 Position: 4442530 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 68.29% | 31.71% |
| All Indica | 799 | 45.81% | 54.19% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 61.33% | 38.67% |
| Indica II | 213 | 12.68% | 87.32% |
| Indica Intermediate | 211 | 51.66% | 48.34% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104442530 | G->A | INTERGENIC | None |