Detailed information of SNP:
|
SNP ID:
sf0104467017(Gbrowse)
Chromosome: chr01 Position: 4467017 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1289 | 60.51% | 39.49% |
| All Indica | 679 | 57.14% | 42.86% |
| All Japonica | 496 | 63.51% | 36.49% |
| Aus | 58 | 65.52% | 34.48% |
| Indica I | 316 | 56.96% | 43.04% |
| Indica II | 184 | 54.35% | 45.65% |
| Indica Intermediate | 179 | 60.34% | 39.66% |
| Temperate Japonica | 335 | 86.87% | 13.13% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104467017 | C->G | LOC_Os01g08890(LOC_Os01g08890.1) | UTR_5_PRIME |