Detailed information of SNP:
|
SNP ID:
sf0104471484(Gbrowse)
Chromosome: chr01 Position: 4471484 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1330 | 89.17% | 10.83% |
| All Indica | 724 | 81.35% | 18.65% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 54 | 92.59% | 7.41% |
| Indica I | 344 | 95.06% | 4.94% |
| Indica II | 187 | 47.06% | 52.94% |
| Indica Intermediate | 193 | 90.16% | 9.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104471484 | T->G | LOC_Os01g08890(LOC_Os01g08890.1) | INTRON |