Detailed information of SNP:
|
SNP ID:
sf0104487960(Gbrowse)
Chromosome: chr01 Position: 4487960 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 68.08% | 31.92% |
| All Indica | 799 | 55.19% | 44.81% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 37.33% | 62.67% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 52.13% | 47.87% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104487960 | A->G | LOC_Os01g08930(LOC_Os01g08930.1) | INTRON |